PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627906.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 202aa    MW: 22684.3 Da    PI: 6.7902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.7e-28106164159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+W+KYGq+ + g++++rsYY+Ct+agC vkk+ver a++ k ++itY g+H+h+
  XP_013627906.1 106 LDDGYSWKKYGQRLIMGNQNTRSYYKCTFAGCDVKKHVERRADNVKSLVITYYGNHEHD 164
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-2895166IPR003657WRKY domain
SuperFamilySSF1182901.96E-24100166IPR003657WRKY domain
PROSITE profilePS5081128.461101166IPR003657WRKY domain
SMARTSM007741.3E-27106165IPR003657WRKY domain
PfamPF031067.0E-22107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTSYSTSQLI FTISPPSPVA IIGPPEVVET SGGDHATMMI SNNGLPHQRM DVDQAPEDHN  60
IIDVLNVEPS SPKRREDEVS NIIGTLRAGR YNEGVIIQME SEENNLDDGY SWKKYGQRLI  120
MGNQNTRSYY KCTFAGCDVK KHVERRADNV KSLVITYYGN HEHDAPVQRR KCYSLKKRSG  180
SSMFQDASNR TPRVNSSEGE TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2397167878Probable WRKY transcription factor 4
2lex_A2e-2397167878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931430.0KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627906.11e-151PREDICTED: probable WRKY transcription factor 10
RefseqXP_013627907.11e-151PREDICTED: probable WRKY transcription factor 10
RefseqXP_013655374.11e-151probable WRKY transcription factor 10
TrEMBLA0A0A7RE621e-148A0A0A7RE62_BRAOC; WRKY40 protein
STRINGBo3g185400.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1951837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.18e-31WRKY DNA-binding protein 10