PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627883.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 192aa MW: 21280 Da PI: 9.136 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.4e-19 | 150 | 186 | 1 | 35 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC++++Tp+WRrgp g+ktLCnaCG+++rk+++ XP_013627883.1 150 CTnlNCNAIDTPMWRRGPLGPKTLCNACGIKFRKEEE 186 66569*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.1E-6 | 146 | 192 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-11 | 147 | 189 | No hit | No description |
Pfam | PF00320 | 1.0E-16 | 150 | 186 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.596 | 154 | 188 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-13 | 154 | 188 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.49E-11 | 154 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEKELDLTLR LGLPSPAIET HLSLDTPTTN QGINIDDGRR DNDAGGENHE RHIDVNMRYY 60 NLVFNHFAGI RETLNFTPFP IQPSPYSSPA PTPATPTRSD YVLIDVPARR AVRSSLATGN 120 ALNANADANA KQRRGCGGCC GGRIGWMRKC TNLNCNAIDT PMWRRGPLGP KTLCNACGIK 180 FRKEEERRSK RS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627883.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627883.1 | 1e-142 | PREDICTED: GATA transcription factor 29-like | ||||
Swissprot | Q9LT45 | 3e-43 | GAT29_ARATH; GATA transcription factor 29 | ||||
TrEMBL | A0A0D3BCG1 | 1e-140 | A0A0D3BCG1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g076170.1 | 1e-141 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10652 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 2e-37 | GATA transcription factor 29 |
Publications ? help Back to Top | |||
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