PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627800.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 292aa    MW: 32615.3 Da    PI: 6.9188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-173382255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a+++a+ kl+g
  XP_013627800.1 33 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVQAAMAYDEAAMKLYG 82
                    69****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-273288No hitNo description
PROSITE profilePS5103220.7323390IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-203389IPR016177DNA-binding domain
SMARTSM003802.1E-333396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-293389IPR001471AP2/ERF domain
PRINTSPR003674.1E-93445IPR001471AP2/ERF domain
PfamPF008479.9E-133482IPR001471AP2/ERF domain
PRINTSPR003674.1E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVQAA MAYDEAAMKL YGPEARLNLL QPQQKQKQEV KRNLSFSDHG SGSWSYKLDT  120
IRGLDLGLGP SNGSRGSWSG SFSIPREDDH HNVSWLLPKR SSSQDQESVN DASGLAFSNK  180
MQPRNLMMTP KNGSSNGVWS RFLVGQEKKT EYDVSSSCGS SDNKESILVP SGSGGEGMSR  240
PEVEVEGGTG YLEMDDLLEI DDLGLLIGKD GDFKNWCCDE FQHPWNWFSE RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-153489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627800.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-150DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A0D3B1T40.0A0A0D3B1T4_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZTY10.0A0A3P5ZTY1_BRACM; Uncharacterized protein
TrEMBLA0A3P6A0970.0A0A3P6A097_BRAOL; Uncharacterized protein
STRINGBo3g013160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-129ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]