PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627657.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 220aa    MW: 23910.8 Da    PI: 4.8162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.5e-1469118155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a ++l+g
  XP_013627657.1  69 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVASLALKG 118
                     5699**975..6*********843...5*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-1669126IPR016177DNA-binding domain
SMARTSM003803.1E-2270132IPR001471AP2/ERF domain
PROSITE profilePS5103218.59770126IPR001471AP2/ERF domain
CDDcd000181.24E-2571126No hitNo description
PfamPF008471.3E-771118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2371126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSNSSDSPTT GNKQTFNVPS IALPSKSSDQ SLQTSPGSSS SPSPTPRPSL VADGSPARIA  60
ATRTSGRHSF FRGIRLRNGK WVSEIREPRK TTRIWLGTYP VPEMAAAAYD VASLALKGSE  120
SVLNFPGLVL SYVAPASNSA KDIRAAAARA AEMKQPGKEE EEEEALYSSL EFMDEEAMLN  180
MPSLFTEMAE GMLMSPPRMT DLWMDDSPEN HEGDSLWSYK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627657.11e-159PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ904e-81ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D3B3X01e-158A0A0D3B3X0_BRAOL; Uncharacterized protein
STRINGBo3g023490.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-71ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]