PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627627.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22724.1 Da PI: 4.7621 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00072 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + Fs+ L H++ H XP_013627627.1 60 YTCSFCVRGFSNAQALGGHMNIH 82 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.33E-6 | 58 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 58 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.053 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MLNFHNFFIA LFMLRKKSII YVLKKIQNME NIKNPKNTDD PDGMSRDSHQ SVDNSLPRSY 60 TCSFCVRGFS NAQALGGHMN IHRRDRANLR QKLMEDNKDD VVAESDSSEV VSLDLNEKQQ 120 EDDLARDDDD QDQDQGVDKN IIPGQKLGFW VQENKVDINA DGKVTEVSSI DGSSSSHHLE 180 NENLDLELRL GQRAVETKTT |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269|PubMed:15486103}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627627.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189394 | 0.0 | AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627627.1 | 1e-147 | PREDICTED: transcriptional regulator TAC1-like | ||||
Swissprot | Q9SR34 | 4e-78 | TAC1_ARATH; Transcriptional regulator TAC1 | ||||
TrEMBL | A0A078F3E4 | 1e-122 | A0A078F3E4_BRANA; BnaC03g36070D protein | ||||
TrEMBL | A0A0D3BAE8 | 1e-122 | A0A0D3BAE8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BAH8 | 1e-122 | A0A3P6BAH8_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g062110.1 | 1e-123 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14238 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 5e-16 | C2H2 family protein |
Publications ? help Back to Top | |||
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