PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 329aa    MW: 37029.5 Da    PI: 6.3118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv++++++G  +W++ +++ g++R++k+c++rw +yl
   XP_013627580.1 14 KGPWTPEEDEKLVNYIQKHGHSSWTALPKRAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding53.46.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+++eE++ ++++++  G++ W+tIa+ ++ gRt++++k++w+++l
   XP_013627580.1  67 RGRFSPEEEQTILNLHAVVGNK-WSTIANNLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.349961IPR017930Myb domain
SuperFamilySSF466892.51E-3111108IPR009057Homeodomain-like
SMARTSM007177.6E-161363IPR001005SANT/Myb domain
PfamPF002497.1E-181461IPR001005SANT/Myb domain
CDDcd001676.50E-131661No hitNo description
PROSITE profilePS5129426.30762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2765117IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002494.0E-1567112IPR001005SANT/Myb domain
CDDcd001678.46E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRRSPCSDDS GLKKGPWTPE EDEKLVNYIQ KHGHSSWTAL PKRAGLNRCG KSCRLRWTNY  60
LRPDIKRGRF SPEEEQTILN LHAVVGNKWS TIANNLPGRT DNEIKNFWNT HLKKKLIQMG  120
VDPMTHRPRP DIFSSLSQLV SMSSNLRGFV DMQLQFQTDQ EQTILKLQTE MAKLKLLHDL  180
LQPSSMNNNI NPNDFDTLSL LNPTATSSNL DLGSYLQDFN SIPSLETLNS NMGTSSVLPQ  240
NPEDNHFSFF TQKENRNVWL SDPSSSNQSL VPSLDPSSVV SGDLIRNQYI IEDVNSNLMT  300
SSSGQESGAS ASPVWPDHLL DDSIFSNIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627580.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF30.0MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A0D3B0G80.0A0A0D3B0G8_BRAOL; Uncharacterized protein
STRINGBo3g005530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-161myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]