PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627579.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 427aa MW: 48186.1 Da PI: 4.7208 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 264 | 321 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYG+K v+g+ +prsYY+Ct+ gC+vkk+ver a+d k++++tY g+Hnh+ XP_013627579.1 264 DDGYQWRKYGRKIVNGNSNPRSYYKCTYGGCNVKKHVERGADDVKLLVVTYDGKHNHP 321 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-30 | 248 | 323 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.227 | 258 | 323 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-26 | 258 | 323 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-33 | 263 | 322 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-24 | 264 | 321 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MSDCDGIVRA MLEQTDNGLN SISQIFPKTN LSTDHQSEQR SSLGERVSSR IGFNVPPLET 60 ENIMSPFAVS RSQTNVPSPL IAVSPGFSPS ALLQSPKKFS NSFSQSPVAN DGPPEMVESS 120 GGDYATTMIF NNDVPHQPMN FDHMPHHEGF YDIPTEESVY VPSHESHADL IGAPLVTSFE 180 SDEVANETDI MNIISLDSED EDEDYKEDEE YKEDENVDEE DDSVDELPPR KRRKYEVSDM 240 FGAKRSRKDE RVILRMECEE DNPDDGYQWR KYGRKIVNGN SNPRSYYKCT YGGCNVKKHV 300 ERGADDVKLL VVTYDGKHNH PIPTGRSSNR SGPRNRSGFS VSQTPRLGRL PSSSSACQYC 360 YSSLEPHPDM ALLYMTGLSK LQSFPVNHNH GFMYRHDEPI IDRVIPDRTE VYNGMKDRLL 420 PNFGFNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-23 | 259 | 323 | 13 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-23 | 259 | 323 | 13 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the endosperm of embryo from the two nuclei stage to the late globular embryo stage, including the endosperm cellularization time. {ECO:0000269|PubMed:16293693}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in male gametophytes (pollen) and in the endosperm of fertilized ovules. {ECO:0000269|PubMed:16293693}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627579.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593144 | 0.0 | KM593144.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY41) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627579.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 isoform X3 | ||||
Swissprot | Q9LG05 | 1e-120 | WRK10_ARATH; Probable WRKY transcription factor 10 | ||||
TrEMBL | A0A0A7RCK1 | 0.0 | A0A0A7RCK1_BRAOC; WRKY41 protein | ||||
STRING | Bo3g185420.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 6e-56 | WRKY DNA-binding protein 10 |