PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 463aa MW: 52187.7 Da PI: 4.6625 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.8e-30 | 300 | 357 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYG+K v+g+ +prsYY+Ct+ gC+vkk+ver a+d k++++tY g+Hnh+ XP_013627578.1 300 DDGYQWRKYGRKIVNGNSNPRSYYKCTYGGCNVKKHVERGADDVKLLVVTYDGKHNHP 357 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-30 | 284 | 359 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.227 | 294 | 359 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-26 | 294 | 359 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-33 | 299 | 358 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-24 | 300 | 357 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MDTIPNLCVF LDISGFSPPK LSDWSGNSIE IWNPPKMSDC DGIVRAMLEQ TDNGLNSISQ 60 IFPKTNLSTD HQSEQRSSLG ERVSSRIGFN VPPLETENIM SPFAVSRSQT NVPSPLIAVS 120 PGFSPSALLQ SPKKFSNSFS QSPVANDGPP EMVESSGGDY ATTMIFNNDV PHQPMNFDHM 180 PHHEGFYDIP TEESVYVPSH ESHADLIGAP LVTSFESDEV ANETDIMNII SLDSEDEDED 240 YKEDEEYKED ENVDEEDDSV DELPPRKRRK YEVSDMFGAK RSRKDERVIL RMECEEDNPD 300 DGYQWRKYGR KIVNGNSNPR SYYKCTYGGC NVKKHVERGA DDVKLLVVTY DGKHNHPIPT 360 GRSSNRSGPR NRSGFSVSQT PRLGRLPSSS SACQYCYSSL EPHPDMALLY MTGLSKLQSF 420 PVNHNHGFMY RHDEPIIDRV IPDRTEVYNG MKDRLLPNFG FNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-23 | 295 | 359 | 13 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-23 | 295 | 359 | 13 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the endosperm of embryo from the two nuclei stage to the late globular embryo stage, including the endosperm cellularization time. {ECO:0000269|PubMed:16293693}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in male gametophytes (pollen) and in the endosperm of fertilized ovules. {ECO:0000269|PubMed:16293693}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627578.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593144 | 0.0 | KM593144.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY41) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627578.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 isoform X2 | ||||
Swissprot | Q9LG05 | 1e-121 | WRK10_ARATH; Probable WRKY transcription factor 10 | ||||
TrEMBL | A0A0A7RCK1 | 0.0 | A0A0A7RCK1_BRAOC; WRKY41 protein | ||||
STRING | Bra030847.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 8e-58 | WRKY DNA-binding protein 10 |