PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34937.4 Da PI: 8.9188 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.8 | 9e-49 | 22 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL+kkv kk +++e+i+++diyk++PwdLp +++++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s XP_013627414.1 22 LPGFRFHPTDEELVGFYLAKKVLLKKpSKIDEIISHIDIYKFDPWDLP-RLRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSD 115 59*******************877764888889***************.7788899**************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++glkktLv+y g+a kg+ktdW+mhe+rl XP_013627414.1 116 gsSKSVIGLKKTLVYYIGSAGKGSKTDWMMHEFRL 150 666677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.69 | 21 | 185 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.07E-50 | 22 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMGSCDKRRG EQEEEEEQKL KLPGFRFHPT DEELVGFYLA KKVLLKKPSK IDEIISHIDI 60 YKFDPWDLPR LRNTEKESYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PVYSDGSSKS 120 VIGLKKTLVY YIGSAGKGSK TDWMMHEFRL PTANDTIPGG STHLNPTPPA MLHAEVWTLC 180 RIFKRNVSSR KYTPDWRELA GGKHVKPQQS KYQEAYISFG DNESTISTNN INIMESKGNY 240 ERNVSQLHQT PHQHQPILMD TASTTQDDYT GPYFSNHEIH NITYENWDEL RTVVEFAFGP 300 SLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-45 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627414.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189335 | 2e-69 | AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627414.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 7e-72 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0D3BB08 | 0.0 | A0A0D3BB08_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g065200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-164 | NAC family protein |