PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 347aa MW: 39536.2 Da PI: 5.2076 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.6 | 2e-38 | 38 | 138 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e +r++am+s+++++ +r r+Pv+G++g+ ++lq + +++el+ XP_013627321.1 38 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILENLDEVQRPEAMKSIIFQSYVRDRNPVHGCLGITQQLQYMIWVAEEELK 132 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_013627321.1 133 AVNSQL 138 999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.304 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-35 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSQIKTIHNP IGSLERFLDL LLISLIVYMT LKGGTSGACA ACKYQRRRCA ADCPLAPYFP 60 AEQPKLFQNV HRLFGVRSIV KILENLDEVQ RPEAMKSIIF QSYVRDRNPV HGCLGITQQL 120 QYMIWVAEEE LKAVNSQLQL YRSGQNHPNP HNMMIHEIGE KQEDLTSQLD LGMGLPVNNN 180 NQGNNTIPFF SPVSETQQQQ PHMSYCSDQV NNHDYNPIPD SCKEVLNNHN TSLAWGQNQF 240 PYNHHNYGFI NQNEHCSETK NNNSVMAIQS QLVNLQMASN QQKEEVDDQN YDEIHQFLEI 300 IDESQSFTET KEVYASSSGE SLKEPIDEIG EKELRRAATC FSLTSVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-25 | 34 | 145 | 7 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-25 | 34 | 145 | 7 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627321.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627321.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 1e-122 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A0D3BHY0 | 0.0 | A0A0D3BHY0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6B275 | 0.0 | A0A3P6B275_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g135950.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-124 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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