PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013627204.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 195aa MW: 22214.9 Da PI: 7.6297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013627204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_013627204.1 97 FSCNYCQRKFYSSQALGGHQNAH 119 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.7E-6	94	124	No hit	No description
PROSITE profile	PS50157	11.094	97	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSFEETYTHL YTLYIRPLMP ETFKHTSLFL IISLTSLFSL TKHLGMDFQP NTSLRLSLPS 60 YKNHQLNLEL VLDPSSMSSS SSSSTNSSSC LEQPRVFSCN YCQRKFYSSQ ALGGHQNAHK 120 LERTLAKKSR ELFRSSTTVD VDQPYPFSGR FELYGRGYEG FVESGGPRDF SGRRVPESGI 180 DQDQEMSHLD LSLRL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269\|PubMed:18192438}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013627204.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627204.1	1e-141	PREDICTED: zinc finger protein 2
Refseq	XP_022554540.1	1e-141	zinc finger protein 2-like
Refseq	XP_022554547.1	1e-141	zinc finger protein 2-like
Swissprot	Q39261	4e-89	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A397ZTX3	1e-116	A0A397ZTX3_BRACM; Uncharacterized protein
STRING	Bra006815.1-P	1e-106	(Brassica rapa)
STRING	Bo3g019270.1	1e-106	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6621	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-89	zinc finger protein 2