PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 35344.5 Da PI: 9.7418 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 77 | 122 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw + XP_013627188.1 77 RGHWRPTEDAKLKELVAQFGPQNWNLIAHHLL-GRSGKSCRLRWCNQ 122 899****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.6e-17 | 129 | 173 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++T+eE+ +l+ a++ +G++ W++I+r ++ gRt++ +k++w+ + XP_013627188.1 129 KKAFTEEEETRLLTAHRAYGNK-WSLISRFFP-GRTDNAVKNHWHVV 173 679*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.24 | 72 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 76 | 125 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.46E-28 | 77 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 77 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-26 | 78 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.05E-13 | 80 | 121 | No hit | No description |
PROSITE profile | PS51294 | 24.394 | 124 | 178 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-15 | 128 | 176 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 129 | 172 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-20 | 131 | 176 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.25E-11 | 131 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MDPKLIEKVL TGNKTIKLSR RFEEANNFGS PPNSHTNLSL ARNHLHNKSY SVLERGENEN 60 SFKRRGNNGM NKKLCSRGHW RPTEDAKLKE LVAQFGPQNW NLIAHHLLGR SGKSCRLRWC 120 NQLDPRINKK AFTEEEETRL LTAHRAYGNK WSLISRFFPG RTDNAVKNHW HVVMARRTRA 180 SERQQALHAP SGNAEMTVSS VYRYNRGGFF GRVAEGTLVN EADDDDGSAV STCTTELSLT 240 PPSSTHQPRF LHDDNTLASG KDGQCVQIAE VNGICSNKMD HQNHYTTTVS EREVEMKTKS 300 GFYIFDFLGV GAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 77 | 178 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds. {ECO:0000269|PubMed:23911125}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers (at protein level) and siliques, and, to a lower extent, in roots, stems and leaves (PubMed:25343985). Expressed in embryos (e.g. heart and torpedo stages) and cotyledons, and, at low levels, in roots and inflorescence (PubMed:23911125). Accumulates specifically in root apical meristem quiescent center (QC) and vascular initial cells (PubMed:16581911, PubMed:24981610). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627188.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627188.1 | 0.0 | PREDICTED: transcription factor MYB23-like | ||||
Swissprot | Q6R053 | 1e-157 | MYB56_ARATH; Transcription factor MYB56 | ||||
TrEMBL | A0A0D3B1P6 | 0.0 | A0A0D3B1P6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g012780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9977 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 1e-146 | myb domain protein 56 |
Publications ? help Back to Top | |||
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