PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 300aa MW: 34913.3 Da PI: 10.2818 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.6e-18 | 19 | 111 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ ++d +++++ +p +f++++ +k+ s +++++ ++g sWev + + +++ y+ ++GW++Fv +n L e++fv+F+++g ++f +v XP_013626977.1 19 FFKIFQSADLFSESMRAMPYNFMKNI-SKEDFSYKMVIRAQWGSSWEVDI--SMNPRFyYMEKSGWNQFVTDNALGENEFVTFTHKGLMRF--NV 108 99*********************777.466799*****************..999999566669********************9887998..66 PP EEE CS B3 95 kvf 97 ++ XP_013626977.1 109 NIY 111 665 PP | |||||||
2 | B3 | 35.7 | 1.5e-11 | 207 | 288 | 9 | 93 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ ++ l +pkkf e++ + esk ++ +++g sWev + ++ r+++++GW + +++ L +gD ++F+l++ +ef l+ XP_013626977.1 207 TNSYLKFLAIPKKFEEAYIPD--ESKVYMIHHSEGkGSWEVFC--LVRQTRTIFSSGWCRLAREYPLSVGDRCTFHLVKPDEFVLT 288 444556789*****9999433..44344444444449******..8888899*************************998888555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-17 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-17 | 14 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.37E-15 | 18 | 111 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-17 | 19 | 110 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-21 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-14 | 196 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-17 | 197 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.912 | 199 | 293 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.12E-10 | 200 | 283 | No hit | No description |
SMART | SM01019 | 3.7E-11 | 202 | 293 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-9 | 206 | 290 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG 60 SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT 120 PRKPHTTTPF SGIKKEEDVK KEDESMGVGV EIEVQKKKRA VEVGESSRGA ALKKKKAEKP 180 KPSNKKKKKM KRKKVKNGVP EFEITITNSY LKFLAIPKKF EEAYIPDESK VYMIHHSEGK 240 GSWEVFCLVR QTRTIFSSGW CRLAREYPLS VGDRCTFHLV KPDEFVLTTK KAREEITVIE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 193 | KKKAEKPKPSNKKKKKMKRKK |
2 | 184 | 193 | KKKKKMKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626977.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189348 | 1e-76 | AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626977.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 1e-105 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | A0A3N6Q559 | 0.0 | A0A3N6Q559_BRACR; Uncharacterized protein | ||||
STRING | Bra001648.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 4e-98 | B3 family protein |
Publications ? help Back to Top | |||
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