PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25670.4 Da PI: 4.3479 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 18 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+A +a++ a+++++g XP_013626957.1 18 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.6E-12 | 18 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 19 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-34 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-31 | 19 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 19 | 76 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.34E-32 | 20 | 78 | No hit | No description |
PRINTS | PR00367 | 5.8E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVDSSLGSDK KKKGNKQPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD 60 VAALSIKGTS AILNFPELSD VLPRPASLSP RDVRAAATKA ALMEFDTTAF CHESETSETE 120 ASDKRSESEG NETASLSIRS DSETSETASF SVTSIDEESS VSDNLEKIVE LPSLGTSLDE 180 SNEFVFFDSL EDLVYMPPWL HSGMEDDFTY NNDSPLNLVF EESFSWNQFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 14 | 77 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00467 | DAP | Transfer from AT4G32800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626957.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626957.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor ERF043-like | ||||
Swissprot | Q9M080 | 4e-97 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A0D3BLR5 | 1e-166 | A0A0D3BLR5_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g171090.1 | 1e-167 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 3e-95 | ERF family protein |
Publications ? help Back to Top | |||
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