PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013626888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25289.4 Da PI: 5.3688 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 80 | 129 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g XP_013626888.1 80 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAALKFKG 129 7********.**********93....36************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-33 | 79 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-39 | 80 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.60E-32 | 80 | 138 | No hit | No description |
SuperFamily | SSF54171 | 3.66E-22 | 80 | 138 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-14 | 80 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.803 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MPFGGDEPEA KEEDEEDENL FPAFSARSQH DRRVMVLALT QVIGNQQSNS HDSPVYNPQD 60 PSKPVAPSHQ DQGNSMGRRH YRGVRQRPWG KWAAEIRDPQ KAARVWLGTF ETAESAALAY 120 DEAALKFKGS KAKLNFPERV NDISNDQLSN STYYSSNQIE PKNIPYYNQY YQDGNNTDML 180 RSSLTTSTTA ATTSSSSGGS SRPQEEQDYA RFWRFGDSSS SSKSGL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 79 | 141 | 4 | 67 | ATERF1 |
3gcc_A | 1e-28 | 79 | 141 | 4 | 67 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013626888.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB022212 | 1e-32 | AB022212.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K22G18. | |||
GenBank | AY560862 | 1e-32 | AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds. | |||
GenBank | BT031357 | 1e-32 | BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-32 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626888.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor ERF114 | ||||
Swissprot | Q9FH54 | 4e-96 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A0D3BFY9 | 1e-167 | A0A0D3BFY9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g109240.1 | 1e-168 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5292 | 18 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-77 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|