PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626825.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 796aa    MW: 89774.2 Da    PI: 4.5101
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14e-10457501953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +  +e L ++F +n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  XP_013626825.1 457 RAAVEKLRQVFVENELPSKAVRDSLSKELSLDPEKVSKWFKNARY 501
                     567899*************************************97 PP
2PHD41.92.3e-14193248151
                     SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  XP_013626825.1 193 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 248
                     6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.53E-14185250IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-12189248IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976191248IPR019787Zinc finger, PHD-finger
PfamPF006281.6E-11193248IPR019787Zinc finger, PHD-finger
CDDcd155044.59E-32193245No hitNo description
SMARTSM002497.7E-10193246IPR001965Zinc finger, PHD-type
PROSITE patternPS013590194245IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.5E-11434500IPR009057Homeodomain-like
PROSITE profilePS5007112.584446506IPR001356Homeobox domain
SMARTSM003891.6E-10448510IPR001356Homeobox domain
SuperFamilySSF466894.71E-10448512IPR009057Homeodomain-like
CDDcd000861.23E-8449501No hitNo description
PfamPF000461.3E-7457501IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MKESVTKGRI EKETDKACVS VEKAESTLLS SLVKKGKVTS NKRKYTKRKT EEELSSKSNK  60
RKYSRGLVRC NEEEEEKGKK TRKRKSKRQQ KGNKAEEEEV DEALRLQRRT RYLLIKMKMQ  120
QNLIDAYAAE GWKGQSREKI RPDKELERAR KHILDCKLGL RDAIHQLDLL SSVGSMEERV  180
MAPDGSIHHD HIFCAECNSR EAFPDNDIIL CDGTCNRAFH QKCLDPPLET ESIPPGDQGW  240
FCKFCDCKIE IIDAMNAQIG TQFSVDSNWQ DIFNEEASLP VGCEATLNKE ADWPSDDSED  300
GDYDPETKDK SSSKSDSGGG DNDGESVSSS SVSLASDGVA LSTGSWEGGN MVESGETSNE  360
ETVCGPRQRK TVDYTKLYHE MFGKDAVLQE QGSEDEDWGP SDRRKRRKES DGGSTLGTVC  420
ENNKKDQDVK ETPEQSERDS VSVEGKVGKR RMFRIPRAAV EKLRQVFVEN ELPSKAVRDS  480
LSKELSLDPE KVSKWFKNAR YMALRNRKTE SMKQPEGSKA GSGDSGPEAV MMEKNTETNE  540
TQCIVDESVM EENIGTNETQ GSVDETTKEK NTVTNGIKDT LDETVMEENT EAPKIQDTLV  600
ETFMEKKSET NVIQDTADET VMEYTETKEV QDTVDVENNS ETNEIQGTME INEIQDTMDE  660
TVPLSYDGFT NQTTVSACND KQEETEDAND SFPTPPEDES QQYLEQKDSS FALVPHEELT  720
SEMSVETPLE DKEAEEELEA LMEVLCRAEN KLMDVTHRLE RFKTPKGRKK LSKSSSCLSE  780
EDYVVYVPTA EIKVKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085TRKRKS
2403408RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626825.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626825.10.0PREDICTED: pathogenesis-related homeodomain protein-like
RefseqXP_013712729.10.0pathogenesis-related homeodomain protein
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0D3A3980.0A0A0D3A398_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FSG60.0A0A3P6FSG6_BRAOL; Uncharacterized protein
STRINGBo1g014710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]