PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626807.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 372aa MW: 42127 Da PI: 7.6092 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99 | 3.2e-31 | 192 | 246 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++F+e+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_013626807.1 192 KTRIRWTQDLHDKFLECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 246 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.326 | 189 | 249 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-17 | 189 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 191 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-24 | 192 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-8 | 196 | 245 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.0E-20 | 276 | 323 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDNNFESSNA SQGSRLQLQP QPPQPFNLQD VDTIHYSQTS PWTTETFSGF TPYDCIANQS 60 FSLQCSSSKP YPPSFHSYDH QSSDPPSLDQ SQSMVPMQPS SDQYLKPLYK SSCVNNFSAT 120 NASSASYSLC FGASQDPQEV CRRNYSNSNV TQLNFSLSHH QPKQTHSRFS SPSFSTYGGS 180 MVRNYGTVTG NKTRIRWTQD LHDKFLECVN RLGGADKATP KAILKLMDSE GLTIFHVKSH 240 LQKYRIAKYI PDPREGKFEK RSCSKELSQL DTKTGVQIKE ALQLQLDVQR HLHEQLEIQR 300 NLQVRIEEQG KQLKLMIEQQ QKTKESLLKS PNAEVSLPLS AFDHSPPPFP LQDAEAMMLP 360 SYEDTHFQSK IS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-22 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626807.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626807.1 | 0.0 | PREDICTED: probable transcription factor KAN3 | ||||
Swissprot | Q0WVU3 | 0.0 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A078JD79 | 0.0 | A0A078JD79_BRANA; BnaCnng44310D protein | ||||
TrEMBL | A0A0D3B019 | 0.0 | A0A0D3B019_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g004040.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-169 | G2-like family protein |