PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626799.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26424.9 Da    PI: 9.8713
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.7e-301059150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+EL vLCdaeva+i+fs++g+lyey+
  XP_013626799.1 10 KRIENSTNRQVTFCKRRNGLLKKAYELAVLCDAEVALIVFSTRGRLYEYA 59
                    79***********************************************8 PP
2K-box98.41e-32781744100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++ s++e +a+++qqe+akL+++i+++q+++R+l+G++L+ L++keL+q+e++Lek++++iRskK+elll++ie+l k+e +l++e  +Lr+k+
  XP_013626799.1  78 ANTHSVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSALNVKELKQVENRLEKAISRIRSKKHELLLAEIENLHKREIKLDNESIYLRTKI 172
                     455569999*************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_013626799.1 173 AE 174
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-40261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.347262IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-32384IPR002100Transcription factor, MADS-box
CDDcd002651.61E-41376No hitNo description
PRINTSPR004041.9E-32424IPR002100Transcription factor, MADS-box
PROSITE patternPS003500458IPR002100Transcription factor, MADS-box
PfamPF003193.3E-261158IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-322439IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-323960IPR002100Transcription factor, MADS-box
PfamPF014866.7E-2487172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.86588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MIGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELAVLC DAEVALIVFS TRGRLYEYAN  60
DNIRATFERY KNSSSGNANT HSVQEINAAY YQQESAKLRQ QIQTIQNSNR NLMGDSLSAL  120
NVKELKQVEN RLEKAISRIR SKKHELLLAE IENLHKREIK LDNESIYLRT KIAEVERFQQ  180
HHHQMVSGTE MTAIEALASR NYFAHNIMTI GSGSGAGHGC SYSDPDKKTH LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20287189MEF2C
5f28_B3e-20287189MEF2C
5f28_C3e-20287189MEF2C
5f28_D3e-20287189MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626799.11e-171PREDICTED: agamous-like MADS-box protein AGL11
SwissprotQ388361e-134AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A398A6271e-162A0A398A627_BRACM; Uncharacterized protein
TrEMBLM4C9181e-162M4C918_BRARP; Uncharacterized protein
STRINGBra000696.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49942234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-137MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]