PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013626721.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 285aa MW: 32831.7 Da PI: 10.1324

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013626721.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.2	8.2e-20	19	113	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ ++d +++++ +p +f+ ++ +k+ s ++++++++grsWev + + +++ y+ ++GW++Fv++n L +++fv+F+++g ++f +v XP_013626721.1 19 FFKIFHSADLSSESMRGIPYDFM-KNVSKEDFSCKMVIRTKWGRSWEVDI--SMNPRFyYMEKSGWNQFVSDNALGSNEFVTFTHSGLMCF--NV 108 89*999***********.6656778999************..999999566669******************9988999..88 PP EEE-S CS B3 95 kvfrk 99 ++r+ XP_013626721.1 109 NIYRE 113 88775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-19	13	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-18	15	119	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.16E-16	18	112	No hit	No description
Pfam	PF02362	9.6E-18	19	113	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-22	19	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.493	19	114	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.44E-13	182	272	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-9	184	273	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.418	184	277	IPR003340	B3 DNA binding domain
SMART	SM01019	7.3E-4	187	277	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEWNRGFGRV KEERKSSSFF KIFHSADLSS ESMRGIPYDF MKNVSKEDFS CKMVIRTKWG 60 RSWEVDISMN PRFYYMEKSG WNQFVSDNAL GSNEFVTFTH SGLMCFNVNI YRESGKEIVL 120 PHATTPFSGI KNEEGERSYK DVKKEDESMG GVGHVEIGES SRGAALRKKK AEKHKRRKKV 180 KYGVPRFKIT ITKSYLKSLP IPTFFDKYLK SESKVYKIHH SEGDGSWEVL SLVHQAHIVL 240 SRGWIKLARE YPLAVGDRCT FHLVKPTEFV LTSKKAKAIE ISISD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013626721.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626721.1	0.0	PREDICTED: B3 domain-containing protein At3g17010-like
Swissprot	Q9LSP6	2e-92	Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBL	A0A0D3BBP8	0.0	A0A0D3BBP8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6B7C9	0.0	A0A3P6B7C9_BRAOL; Uncharacterized protein
STRING	Bo3g068590.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17010.1	5e-91	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]