PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626624.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 570aa    MW: 64548.9 Da    PI: 6.6622
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.14.8e-28114199187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+p W+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_013626624.1 114 RWPRQETLTLLEIRSRLDHKFKEANQKGPFWDEVSRIMsEEYGYQRSGKKCREKFENLYKYYKKTKEGKTGR--QDGKHYRFFRQLEA 199
                     8*************************************8889****************************98..55667*******85 PP
2trihelix59.39.8e-19405490182
        trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                     +W +qe+ +L+e+r++me+ +++   +++++ lWeevs+k+ + gf ++s+  Ckekwe +++ ++k+k++ +kr++e+ss+c  +
  XP_013626624.1 405 CWNEQEIIKLMEIRTSMETVFQEilgECSDEFLWEEVSAKLIQLGFdHKSALLCKEKWECISNGMRKEKKQINKRRKENSSSCGVY 490
                     7*********************977679******************889**********************999999999999655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.934113172IPR017877Myb-like domain
CDDcd122032.87E-18114179No hitNo description
PfamPF138371.3E-19114200No hitNo description
PfamPF138373.3E-11404490No hitNo description
CDDcd122033.27E-14404473No hitNo description
PROSITE profilePS500905.471406466IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEDHHTQYGI PELQQLMKGE GRTTTTASPS TSHFPSDFLG FNLAPAAPPQ HHRVHQFNTD  60
PEMCFLPHGI HGLGGGSSTA GNNSNLNIST SGGGVGFSGF LDGGGLGGSG GTGRWPRQET  120
LTLLEIRSRL DHKFKEANQK GPFWDEVSRI MSEEYGYQRS GKKCREKFEN LYKYYKKTKE  180
GKTGRQDGKH YRFFRQLEAL YGDSNNLVSF PNHNTQFMSS ALHGFHTQNA MNIPTTTSNI  240
HDVDSVHGFL HHQSLSISNN NNSSELELMT SSSEGNDSDS RRKKRSWKAK IKEFIDVNMK  300
RLIERQDIWL EKLTKVIEDK EEQRMMKEEE WRKSEAARVE QVHLFWAKER ERMEARDVAV  360
LEALQYLAGK TLIKPSCSSP EERINGNNEI QNNSENVSVE GSGSCWNEQE IIKLMEIRTS  420
METVFQEILG ECSDEFLWEE VSAKLIQLGF DHKSALLCKE KWECISNGMR KEKKQINKRR  480
KENSSSCGVY YPKTEENSIY IIQESGCNDN DKHHQMIEQG NVGSSTSHAA AGDLRGAMAA  540
STNCFPFVMG DGDQNLWESY SLRLSKGENQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626624.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626624.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS00.0PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0D3AZL60.0A0A0D3AZL6_BRAOL; Uncharacterized protein
STRINGBo3g002510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.10.0Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]