PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626347.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 526aa    MW: 56634.6 Da    PI: 6.6256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.3e-30210269159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  XP_013626347.1 210 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 269
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31195271IPR003657WRKY domain
SuperFamilySSF1182901.57E-27203271IPR003657WRKY domain
PROSITE profilePS5081128.69205271IPR003657WRKY domain
SMARTSM007749.3E-37210270IPR003657WRKY domain
PfamPF031064.3E-27211269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEVLLKLPTS DSLLKDKVLG SAQILEASKG DDDHQELESA KAEMSEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIVQQEP SNNLTRDQNV NGLQKATTDL SSFDQEHELV SLSLGRRSSS  120
PSDNTSKKED KEVNADEELT KAGLTLGFSN GSLSSQENSS GETWPSGKVT GKRSSPAPAS  180
GGDVEGEAGQ QNNVKRARVC VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP  240
GCPVRKQVQR CADDMSILIT TYEGTHSHPL PLSATTMAST TSAAASMLLS GSSSSSSSAA  300
EMIGNNLYDN SRFINNKSFY SPTLHSPLHP TVTLDLTTPQ HSSSSSLPSL NFNKYSNSFQ  360
NFPSTSLNFS SNPSLSSSTT LSIPTVWGSG YSSYNPYPYN NVQFGTSNQG KTVQNSMSLT  420
ETLTKALTSD PSFQTVIAAA ISSMVGSNGE KQIVNPISNN VQQTATTNNI KGCGSYFSSL  480
LMSNIVANNQ TGASLDQPPS QPPLSMFKNS SSSSSTTSFV NKEEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21197271174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841140.0FJ384114.1 Brassica napus cultivar Westar WRKY transcription factor 72 (WRKY72) mRNA, WRKY72-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626347.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A0D3B1770.0A0A0D3B177_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A2J00.0A0A3P6A2J0_BRAOL; Uncharacterized protein
STRINGBo3g010100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72