PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626236.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 274aa    MW: 31004 Da    PI: 9.2841
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.54.2e-3961352127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     p+GfrF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp+    +++++ ++w fF++r++++a+g r++r+t  gyWkatg+  +v
  XP_013626236.1   6 PVGFRFYPTEVELISFYLRFQLNGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGLGYWKATGSPGPV 100
                     89***************************999**************9656766667888************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     +s +++++g+kkt+vfy g+ap+g+kt+W m+ey+
  XP_013626236.1 101 FSPENRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 135
                     **********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-433161IPR003441NAC domain
PROSITE profilePS5100545.1275161IPR003441NAC domain
PfamPF023653.7E-196135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEHEIPVGFR FYPTEVELIS FYLRFQLNGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR  60
GDAEQWLFFV PRQEREARGG RPSRTTGLGY WKATGSPGPV FSPENRVIGV KKTMVFYIGK  120
APTGRKTKWK MNEYKGIDET ASVSTIPKLR HEFSVCRIYI KSGSSRAFDR RPTEVYAIER  180
KLPRFGIETS SRATATRRTS EMVDGLSQLR ERKLPKNSVE TSSYDTFTTS QETSDSGGGD  240
QVQLPVNAST TQTISEMVDG LSQPFWEWEQ LNWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-32516617170NO APICAL MERISTEM PROTEIN
1ut4_B4e-32516617170NO APICAL MERISTEM PROTEIN
1ut7_A4e-32516617170NO APICAL MERISTEM PROTEIN
1ut7_B4e-32516617170NO APICAL MERISTEM PROTEIN
3swm_A4e-32516620173NAC domain-containing protein 19
3swm_B4e-32516620173NAC domain-containing protein 19
3swm_C4e-32516620173NAC domain-containing protein 19
3swm_D4e-32516620173NAC domain-containing protein 19
3swp_A4e-32516620173NAC domain-containing protein 19
3swp_B4e-32516620173NAC domain-containing protein 19
3swp_C4e-32516620173NAC domain-containing protein 19
3swp_D4e-32516620173NAC domain-containing protein 19
4dul_A4e-32516617170NAC domain-containing protein 19
4dul_B4e-32516617170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626236.10.0PREDICTED: putative NAC domain-containing protein 61
SwissprotQ9M2901e-131NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLA0A0D3BGU50.0A0A0D3BGU5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AS700.0A0A3P6AS70_BRAOL; Uncharacterized protein
STRINGBo3g122200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-144NAC domain containing protein 61