PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 419aa MW: 47802.8 Da PI: 8.4944 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128 | 9.7e-40 | 154 | 319 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssas 71 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ ++s XP_013626115.1 154 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIMSSlsnplnhggfssceesqtrpalgsmH--TSS 246 5799************************************************************98888888887777776555555331..222 PP TCP 72 eceaesssssasnsssg...........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + + + k+k q+++ +l+k++r+kar+ra++rt+ekm+++ XP_013626115.1 247 ----------------DlcklssmgtvedkgsntnstetrgnkvDGISMRGKRKMLQARTPILKKLSKDEREKARERAKDRTKEKMMKR 319 ................02222222222222222334455667787777777888888888889***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-41 | 155 | 318 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 156 | 214 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.574 | 298 | 315 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MNNNNRSLST TTTISEDYML FPYNDHYSSQ PLLPFSPCSS INDILIPSNF NTSNNHLDHH 60 YQFLQAPSSF SQFEFVPDFA LVASFLPQNN GHNDNQIITT NDHNHYHHHP SLLPLNNPVG 120 KSLVEPLETI TTHIEDSRKI STSQDPKMNK VKKPSRTDRH SKIKTAKGTR DRRMRLSLDV 180 AKELFGLQDM LGFDKASKTV EWLLTQAKPE IIKIMSSLSN PLNHGGFSSC EESQTRPALG 240 SMHTSSDLCK LSSMGTVEDK GSNTNSTETR GNKVDGISMR GKRKMLQART PILKKLSKDE 300 REKARERAKD RTKEKMMKRI SQVNILDEEA HNHHDEIVKN NKSHVNCKYF EATPCQEAIE 360 ELLCKNDGFA VCNEFLVNKF NSSFPMPNHH RSQGTASSIE QQRQFMDLHH FLERPRDLM |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626115.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626115.1 | 0.0 | PREDICTED: transcription factor TCP18-like isoform X5 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A078IV77 | 0.0 | A0A078IV77_BRANA; BnaCnng23770D protein | ||||
TrEMBL | A0A3P6AJB6 | 0.0 | A0A3P6AJB6_BRAOL; Uncharacterized protein | ||||
STRING | Bra001710.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-178 | TCP family protein |