PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 450aa MW: 50928.6 Da PI: 8.3584 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.5 | 3.4e-40 | 154 | 309 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ s ++s XP_013626112.1 154 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIMSSlsnplnhggfssceesqtrpalgSMHTSS-- 246 5799************************************************************87777666665555554333333222222.. PP TCP 74 eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + ++ k+k q+++ +l+k++r+kar+ra++rt+ekm+++ XP_013626112.1 247 --------------DlcklssmgtvedkgsntNSTVMRGKRKMLQARTPILKKLSKDEREKARERAKDRTKEKMMKR 309 ..............1333333444444444445566666999999999999***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-41 | 155 | 308 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 156 | 214 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.574 | 288 | 305 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MNNNNRSLST TTTISEDYML FPYNDHYSSQ PLLPFSPCSS INDILIPSNF NTSNNHLDHH 60 YQFLQAPSSF SQFEFVPDFA LVASFLPQNN GHNDNQIITT NDHNHYHHHP SLLPLNNPVG 120 KSLVEPLETI TTHIEDSRKI STSQDPKMNK VKKPSRTDRH SKIKTAKGTR DRRMRLSLDV 180 AKELFGLQDM LGFDKASKTV EWLLTQAKPE IIKIMSSLSN PLNHGGFSSC EESQTRPALG 240 SMHTSSDLCK LSSMGTVEDK GSNTNSTVMR GKRKMLQART PILKKLSKDE REKARERAKD 300 RTKEKMMKRI SQVNILDEEA HNHHDEIVKN NKSHVNCKYF EATPCQEAIE ELLCKNDGFA 360 VCNEFLVNKF NSSFPMPNHH RSQGTASSIE FGYVPCSSRL TDYIICQISF VSLVTCLAAA 420 ASVYGSSSLL GETKRPHVEL PYIICDRFYR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626112.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626112.1 | 0.0 | PREDICTED: transcription factor TCP18-like isoform X2 | ||||
Swissprot | A1YKT1 | 1e-174 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A078IV77 | 0.0 | A0A078IV77_BRANA; BnaCnng23770D protein | ||||
TrEMBL | A0A3P6AJB6 | 0.0 | A0A3P6AJB6_BRAOL; Uncharacterized protein | ||||
STRING | Bra001710.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-160 | TCP family protein |