PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013626111.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 460aa MW: 51986.7 Da PI: 8.358

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013626111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.7	1.2e-39	154	319	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssas 71 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ ++s XP_013626111.1 154 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIMSSlsnplnhggfssceesqtrpalgsmH--TSS 246 5799**********************************************************98888888887777776555555331..222 PP TCP 72 eceaesssssasnsssg...........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + + + k+k q+++ +l+k++r+kar+ra++rt+ekm+++ XP_013626111.1 247 ----------------DlcklssmgtvedkgsntnstetrgnkvDGISMRGKRKMLQARTPILKKLSKDEREKARERAKDRTKEKMMKR 319 ................02222222222222222334455667787777777888888888889*********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-41	155	318	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.724	156	214	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.574	298	315	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MNNNNRSLST TTTISEDYML FPYNDHYSSQ PLLPFSPCSS INDILIPSNF NTSNNHLDHH 60 YQFLQAPSSF SQFEFVPDFA LVASFLPQNN GHNDNQIITT NDHNHYHHHP SLLPLNNPVG 120 KSLVEPLETI TTHIEDSRKI STSQDPKMNK VKKPSRTDRH SKIKTAKGTR DRRMRLSLDV 180 AKELFGLQDM LGFDKASKTV EWLLTQAKPE IIKIMSSLSN PLNHGGFSSC EESQTRPALG 240 SMHTSSDLCK LSSMGTVEDK GSNTNSTETR GNKVDGISMR GKRKMLQART PILKKLSKDE 300 REKARERAKD RTKEKMMKRI SQVNILDEEA HNHHDEIVKN NKSHVNCKYF EATPCQEAIE 360 ELLCKNDGFA VCNEFLVNKF NSSFPMPNHH RSQGTASSIE FGYVPCSSRL TDYIICQISF 420 VSLVTCLAAA ASVYGSSSLL GETKRPHVEL PYIICDRFYR

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MNNNNRSLST TTTISEDYML FPYNDHYSSQ PLLPFSPCSS INDILIPSNF NTSNNHLDHH  60
YQFLQAPSSF SQFEFVPDFA LVASFLPQNN GHNDNQIITT NDHNHYHHHP SLLPLNNPVG  120
KSLVEPLETI TTHIEDSRKI STSQDPKMNK VKKPSRTDRH SKIKTAKGTR DRRMRLSLDV  180
AKELFGLQDM LGFDKASKTV EWLLTQAKPE IIKIMSSLSN PLNHGGFSSC EESQTRPALG  240
SMHTSSDLCK LSSMGTVEDK GSNTNSTETR GNKVDGISMR GKRKMLQART PILKKLSKDE  300
REKARERAKD RTKEKMMKRI SQVNILDEEA HNHHDEIVKN NKSHVNCKYF EATPCQEAIE  360
ELLCKNDGFA VCNEFLVNKF NSSFPMPNHH RSQGTASSIE FGYVPCSSRL TDYIICQISF  420
VSLVTCLAAA ASVYGSSSLL GETKRPHVEL PYIICDRFYR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013626111.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626111.1	0.0	PREDICTED: transcription factor TCP18-like isoform X1
Swissprot	A1YKT1	0.0	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A078IV77	0.0	A0A078IV77_BRANA; BnaCnng23770D protein
TrEMBL	A0A3P6AJB6	0.0	A0A3P6AJB6_BRAOL; Uncharacterized protein
STRING	Bra001710.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7269	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	1e-171	TCP family protein

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]