PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626050.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 381aa    MW: 42664.4 Da    PI: 4.2365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1870120155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+k ++g
  XP_013626050.1  70 CSYRGVRQRV-WGKWVAEIREP---N-RvSRLWLGTFPTAEEAACAYDEAAKVMYG 120
                     67******99.**********8...2.58***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1270120IPR001471AP2/ERF domain
CDDcd000186.75E-3170128No hitNo description
Gene3DG3DSA:3.30.730.105.0E-3171129IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2071129IPR016177DNA-binding domain
SMARTSM003802.2E-3571134IPR001471AP2/ERF domain
PROSITE profilePS5103222.35271128IPR001471AP2/ERF domain
PRINTSPR003674.1E-107283IPR001471AP2/ERF domain
PRINTSPR003674.1E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MSVNDQTGTD TSSKKRKSRA RADGKTVADR LKQWKDHNEG EENKPRGKVH AKGSKKGCMK  60
GKGGPENTKC SYRGVRQRVW GKWVAEIREP NRVSRLWLGT FPTAEEAACA YDEAAKVMYG  120
RSARLNFPGS EVATTSSQSE VCTVEDKAVI GGDVCVKQED GDCESRAVSQ IVDVKESCGD  180
SRLQDSCVDE RRDVVNSRLS SYLLDEFELD YQSKLTKELE EPKEEEDEVI QPEPEPELTV  240
ADYGWPNDMQ SSVADYGWPS DIQNELGFWD QDDLFDVDEL LGDLDVDLLT GTDPSQNQNQ  300
EQVHPGGNDS HPFLLEPQND ICQNQEQVQP GGDDSHPFQL EPRDDPCQNQ NHVQTGGDDS  360
HPLELEPHDG HEFFDLSFLD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1772128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894310.0AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626050.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821333e-90DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0D3BAM90.0A0A0D3BAM9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B1U40.0A0A3P6B1U4_BRAOL; Uncharacterized protein
STRINGBo3g063910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.13e-74DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]