PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 27426.3 Da PI: 6.1498 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.7e-18 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a ++++g XP_013626008.1 79 NYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 128 69****998.**********843...6********************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.31E-33 | 78 | 138 | No hit | No description |
Pfam | PF00847 | 2.5E-12 | 78 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-38 | 79 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.879 | 79 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-21 | 79 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 79 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGTIEKSVSQ VTLTSSAIFT VSSSSSAAAS FSSSTTSSSS SSTTYNSKRK ASPRSSEDQE 60 DDDNVVKRRK ISGGDKHPNY RGVRMRSWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD 120 VASLAIKGTT AHLNFPELSG ELPRPVTRSP KDIQAAATAA AVNWQDSGAN SLRMNNSDVA 180 ELAETEPSRG VMAQSLSDKD KEEEKLFDLP DLVTDEIIRN DAFSFYSSTW QLCGADHGFR 240 LEEPFFCLND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 74 | 137 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 69 | KRKASPRSSEDQEDDDNVVKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189399 | 0.0 | AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626008.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like isoform X2 | ||||
Refseq | XP_013680874.1 | 0.0 | ethylene-responsive transcription factor ERF034 isoform X2 | ||||
Swissprot | Q8LBQ7 | 1e-104 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0D3B6S3 | 1e-157 | A0A0D3B6S3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6A9J9 | 1e-157 | A0A3P6A9J9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g037480.1 | 1e-158 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-98 | ERF family protein |
Publications ? help Back to Top | |||
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