PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625871.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 410aa    MW: 46794.8 Da    PI: 8.3658
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.31e-23101207186
        trihelix   1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                     +Wt+ +v++Li a+ +++++ + g                     +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++
  XP_013625871.1 101 KWTDTMVRLLIMAVYYIGDEGGVGDqteakkkisgggggggggvlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGtACR 195
                     7**************99999997655667789999999*****************************************************559* PP

        trihelix  75 ssstcpyfdqle 86 
                     ++++ ++++ ++
  XP_013625871.1 196 VVENQALLETMD 207
                     *******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2099234No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEPNAFSAFD PRMLTLETPQ NPPNPVQFQH PHPYSTAGDQ HPHHQQPLKS LYPRSSKAMQ  60
LSPLSVGDEE DRGSGSGSGC HPEDSVGTDG KRRVSQWHRM KWTDTMVRLL IMAVYYIGDE  120
GGVGDQTEAK KKISGGGGGG GGGVLQKKGK WKSVSRAMVE KGFSVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTACRVVENQ ALLETMDHHL TPKLKDEVKK LLNSKHLFFK EMCAYHNSCG  240
HLDQPQQPSQ DPSRHRPEQQ SCIHAAEVAE ESETAEDSES EMEEEETSKK RRRGEGVSGA  300
LKRMREETAR ALDEPGKSAW EKKEWMRRKA LELEERKVGY EWEAVEMEKE RVKWMRYRSK  360
KEREMEKAKL ENQRRMLETE RMVLILRRRE IELVELQSLG KRVDPSSATG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625871.10.0PREDICTED: trihelix transcription factor GT-3a-like
RefseqXP_013684607.10.0trihelix transcription factor GT-3a-like
TrEMBLA0A0D3BAB50.0A0A0D3BAB5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BAB60.0A0A3P6BAB6_BRAOL; Uncharacterized protein
STRINGBo3g061780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-178sequence-specific DNA binding transcription factors