PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625741.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 341aa    MW: 37683.7 Da    PI: 8.2699
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.13.7e-41103180178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +C v+gC++d+s+++eyh+rhkvC+vhsk+pvv+++g +qrfCqqCsrfh l+efDe+k+sCr+rL++hn+rrrk+q+
  XP_013625741.1 103 ICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGNKQRFCQQCSRFHGLEEFDEGKKSCRKRLDGHNRRRRKPQP 180
                     5**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-3296165IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53101178IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-38102183IPR004333Transcription factor, SBP-box
PfamPF031105.7E-30104177IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGRSSSSPR RLQPKEDFPF DLKLGRNIVN  60
SSSSSFSAYG KTEKVISLSK LKESASEASR SSKRTRGNNQ IPICLVDGCD SDFSNCREYH  120
KRHKVCDVHS KTPVVTINGN KQRFCQQCSR FHGLEEFDEG KKSCRKRLDG HNRRRRKPQP  180
DHTDRTATFF QGSKLLDFSS SPHVFPTTSV VSPSWGNGLV SVAMPNGSSY GQNQSYAGSC  240
PAKTGITFPI SSSPNSRGKQ FPFLQEEEDS SRMTSCIHDS DCALSLLSSS SSHLLQPQPP  300
LSLSQETVFY GSGFFENASA VSDGSGNEAV PLPQTFPPFH W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2897177484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160177KKSCRKRLDGHNRRRRKP
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625741.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625741.10.0PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI201e-163SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-163SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A0D3B4390.0A0A0D3B439_BRAOL; Uncharacterized protein
STRINGBo3g024180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-145SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]