PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625680.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 314aa    MW: 36383.7 Da    PI: 9.129
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.83.2e-30186240256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     +r+rW+++LH+rFv+a++++GGs++AtPk+i++ mkv+gLt+++vkSHLQkYR++
  XP_013625680.1 186 QRRRWSQDLHRRFVDALRRIGGSQVATPKQIRDEMKVDGLTNDEVKSHLQKYRMH 240
                     8****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.919182242IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-26183243IPR009057Homeodomain-like
SuperFamilySSF466894.66E-16183243IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-25186240IPR006447Myb domain, plants
PfamPF002491.8E-6187238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVQTDKDRRM SLNLNLSIYS IAKPLSQFLD EVSRIKDNHL KLSEIDVYVG KLEEERKKID  60
VFKRELPLCM LLLNEAIERL KEEASSVMMA SNGKLDVSQG SKLENDNKKN WMSSAQLWIS  120
NSNSTDKEED RRVTQTCNNL NQGGSFTPFN PPMINCSRTE QNHQFNSRTE QNHQFNKPHH  180
IPKKEQRRRW SQDLHRRFVD ALRRIGGSQV ATPKQIRDEM KVDGLTNDEV KSHLQKYRMH  240
IRKHPLSSSD QPRETQSLIS LSRSGSPQSP LVGRGLFNNN GSHISEDDEE EEKSDGRSWR  300
GESDKKRQVV DFEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187PKKEQRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9738391e-105DQ973839.1 Brassica napus clone PBCESTNA15 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625680.10.0PREDICTED: uncharacterized protein LOC106331812
SwissprotF4JRB01e-135HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A0D3BJX30.0A0A0D3BJX3_BRAOL; Uncharacterized protein
STRINGBo3g153770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-140G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]