PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013625517.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 302aa MW: 34348.4 Da PI: 4.8927

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013625517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.8	2.4e-12	19	98	1	80
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +Wt + l L++ +e++ +++ + ++W +s+++ + ++r+ +qC+ kw++l +y +ik++e++++ ++s ++ XP_013625517.1 19 EWTLKDCLILVNEIAAVESDCSNALSSFQKWTMISDNCNALDVHRTFNQCRRKWDSLVSDYSQIKKWESQERGSVHSYWS 98 5999*****************************************************************98766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.8E-10	19	99	No hit	No description
PROSITE profile	PS50090	6.319	20	76	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEEGTSSGSR RTRSQVAPEW TLKDCLILVN EIAAVESDCS NALSSFQKWT MISDNCNALD 60 VHRTFNQCRR KWDSLVSDYS QIKKWESQER GSVHSYWSLS VEKRRKLNLP GNVDNELFQA 120 INAVVMIQEN KDGSEPDSDS DPDAQEDFDV VDVTAELAFA GSKRSRQRTM VVMKENPPHK 180 RKTEEEPRRK NIQEQRAKAT HQKKKTMEVK KKPVVEISTD EEEEEAMSIE EEVKALEAKL 240 GEKTDIIHAI VGRNLAKGSE TEDGVGIEDK LKFVRQQGDE LIACLSEIAN TLDRLREVPQ 300 EI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	167	KRSRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013625517.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625517.1	0.0	PREDICTED: uncharacterized protein LOC106331665 isoform X1
TrEMBL	A0A3P6B6I0	0.0	A0A3P6B6I0_BRAOL; Uncharacterized protein
STRING	Bo3g175040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-114	sequence-specific DNA binding transcription factors