PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625432.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 281aa    MW: 30994 Da    PI: 10.2641
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.16.8e-29136195258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ++YVN+KQy++I++RRq+Rak+++   ++k ++k rkpy+h+SRh hAlrRpRgsgGrF
  XP_013625432.1 136 GTIYVNSKQYHGIIRRRQSRAKAAAvldQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 195
                     689*********************9999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.6E-29133198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.67134198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.4E-21137159IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-23137195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.4E-21172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDNDSLA GVKVRSAGGI EQGVNKQSNS  60
VSHFAFSLGD VKSPRVVPKP HGSAFSMQPP YLELGFSQPQ MYKKYPCVEQ QYYGVLSPYG  120
SHSSVMLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA VLDQNKPSSK FRKPYMHHSR  180
HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTQPQQSNS QDSDVLHPEN VTMNLSNRLG  240
SEVTSMNYFL SSSVHPLGGK VMPSKWITAA AMDNGCCSFK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-14138198562HAPB protein
4g92_A1e-14138198562HAPB protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625432.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260620.0BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625432.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
RefseqXP_013625433.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
RefseqXP_013684485.10.0nuclear transcription factor Y subunit A-2-like
SwissprotQ9M9X41e-161NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A0D3B9V30.0A0A0D3B9V3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B9F50.0A0A3P6B9F5_BRAOL; Uncharacterized protein
TrEMBLW6D5P70.0W6D5P7_BRANA; Transcription factor subunit NF-YA2
STRINGBo3g060160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-163nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]