PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 281aa MW: 30994 Da PI: 10.2641 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 92.1 | 6.8e-29 | 136 | 195 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++k ++k rkpy+h+SRh hAlrRpRgsgGrF XP_013625432.1 136 GTIYVNSKQYHGIIRRRQSRAKAAAvldQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 195 689*********************9999*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.6E-29 | 133 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.67 | 134 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.4E-21 | 137 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-23 | 137 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.4E-21 | 172 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDNDSLA GVKVRSAGGI EQGVNKQSNS 60 VSHFAFSLGD VKSPRVVPKP HGSAFSMQPP YLELGFSQPQ MYKKYPCVEQ QYYGVLSPYG 120 SHSSVMLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA VLDQNKPSSK FRKPYMHHSR 180 HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTQPQQSNS QDSDVLHPEN VTMNLSNRLG 240 SEVTSMNYFL SSSVHPLGGK VMPSKWITAA AMDNGCCSFK T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-14 | 138 | 198 | 5 | 62 | HAPB protein |
4g92_A | 1e-14 | 138 | 198 | 5 | 62 | HAPB protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625432.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT026062 | 0.0 | BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625432.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_013625433.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_013684485.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Swissprot | Q9M9X4 | 1e-161 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A0D3B9V3 | 0.0 | A0A0D3B9V3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6B9F5 | 0.0 | A0A3P6B9F5_BRAOL; Uncharacterized protein | ||||
TrEMBL | W6D5P7 | 0.0 | W6D5P7_BRANA; Transcription factor subunit NF-YA2 | ||||
STRING | Bo3g060160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-163 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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