PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625315.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 304aa    MW: 33290.9 Da    PI: 6.5729
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.99.1e-16221256134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_013625315.1 221 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANKG 256
                     ****865556***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.6E-1175110IPR010399Tify domain
PROSITE profilePS5132014.51375110IPR010399Tify domain
PfamPF062003.0E-1177109IPR010399Tify domain
PROSITE profilePS5101713.096145187IPR010402CCT domain
PfamPF062031.1E-15145187IPR010402CCT domain
SMARTSM004011.9E-12215268IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.906215263IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-12216270No hitNo description
Gene3DG3DSA:3.30.50.104.3E-15219262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.77E-13220262No hitNo description
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13221256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDDDVLHGSN GRTHIAETQD PMHHVHYGHH ALQHIHNGSG MVDDHADGSG DGVDTDVPSH  60
PGNITDNRGE VVDRGSEQGD QLTLSFQGQV YVFDSVLPEK VQAVLLLLGG REVPQAPPTG  120
LGASHQNNRV LGLPGTPQRF SMPQRLASLV RFREKRKERN FDKKIRYTVR KEVALRMQRN  180
KGQFTSAKSN NGEAAADGSS WESSQTWAIE GSEAQNQEIS CRHCGIGEKS TPMMRRGPEG  240
PRTLCNACGL MWANKGALRD LSRGAPQTSQ NLPVNNEVSN MQEEANLEAD QMMVTVANNI  300
SNSQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625315.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625315.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0D3BMQ80.0A0A0D3BMQ8_BRAOL; Uncharacterized protein
STRINGBo3g181450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.20.0ZIM-LIKE 2