PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 280aa MW: 30750.6 Da PI: 6.692 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.8e-13 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+ E++++++a +++ + Wk+I +g +t q++s+ qky XP_013625292.1 45 RQSWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 89 899*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.39E-16 | 39 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.325 | 40 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 42 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-18 | 43 | 92 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.8E-10 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 45 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-7 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MTSSLSSNPV VAEERPAETS TDLTDTTTEA PEKKVRKAYT ISKSRQSWTE GEHDKFLEAL 60 QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVQKNGTFA HVPPPRPKRK AAHPYPQKAS 120 KNAQMSLHVS MSFPPEISNV SGYGSWDDDT SALLSIAVSE VILPNDEIDT LCGGEVVIES 180 NGSASAVSPS ASGIGSSSRT LSGSEGLRPV NQAPSLKGLP DFAEVYNFIG SVFDPDSKGR 240 MKKLKEMDPI NFETVLLLMR NLTVNMSNPD FEPSRKVQNT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352624 | 0.0 | AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625292.1 | 0.0 | PREDICTED: protein REVEILLE 4-like isoform X2 | ||||
Refseq | XP_013745996.1 | 0.0 | protein REVEILLE 4-like isoform X2 | ||||
Swissprot | Q6R0G4 | 1e-163 | RVE4_ARATH; Protein REVEILLE 4 | ||||
TrEMBL | A0A397ZRN4 | 1e-178 | A0A397ZRN4_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6AC61 | 1e-178 | A0A3P6AC61_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g002070.1 | 1e-178 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02840.3 | 1e-135 | LHY/CCA1-like 1 |
Publications ? help Back to Top | |||
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