PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 287aa MW: 31324 Da PI: 5.2289 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.1e-13 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+ E++++++a +++ + Wk+I +g +t q++s+ qky XP_013625291.1 45 RQSWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 89 899*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.47E-16 | 39 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.325 | 40 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 42 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-18 | 43 | 92 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.8E-10 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 45 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-7 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MTSSLSSNPV VAEERPAETS TDLTDTTTEA PEKKVRKAYT ISKSRQSWTE GEHDKFLEAL 60 QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVQKNGTFA HVPPPRPKRK AAHPYPQKAS 120 KNAQMSLHVS MSFPPEISNV SGYGSWDDDT SALLSIAVSE VILPNDEIDT LCGGEVVIES 180 NGSASAVSPS ASGIGSSSRT LSGSEGLRPV NQAPSLKGLP DFAEVYNFIG SVFDPDSKGR 240 MKKLKEMDPI NFETVLLLMR NLTVNMSNPD FEPSSDAAEE GSEHLSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625291.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352624 | 0.0 | AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625291.1 | 0.0 | PREDICTED: protein REVEILLE 4-like isoform X1 | ||||
Refseq | XP_022554150.1 | 0.0 | protein REVEILLE 4-like isoform X1 | ||||
Swissprot | Q6R0G4 | 1e-169 | RVE4_ARATH; Protein REVEILLE 4 | ||||
TrEMBL | A0A397ZRN4 | 0.0 | A0A397ZRN4_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6AC61 | 0.0 | A0A3P6AC61_BRAOL; Uncharacterized protein | ||||
STRING | Bra005751.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15213 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02840.2 | 1e-138 | LHY/CCA1-like 1 |
Publications ? help Back to Top | |||
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