PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 425aa MW: 45485.4 Da PI: 8.8492 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.3e-12 | 42 | 65 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG C yG+rC+++H+p XP_013625214.1 42 PDCPYYMRTGVCGYGSRCRYNHPP 65 78********************97 PP | |||||||
2 | zf-CCCH | 42.4 | 1.2e-13 | 86 | 110 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tGtCkyG++CkF+H++ XP_013625214.1 86 EPPCQFYLKTGTCKYGASCKFNHPR 110 79*********************96 PP | |||||||
3 | zf-CCCH | 35.7 | 1.5e-11 | 133 | 157 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ XP_013625214.1 133 EKECSYYLKTGQCKFGITCKFHHPQ 157 689********************97 PP | |||||||
4 | zf-CCCH | 36.3 | 9.3e-12 | 275 | 298 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++++tG Ck+G +CkF+H++ XP_013625214.1 275 LECQYYLKTGDCKFGTSCKFHHPR 298 58********************96 PP | |||||||
5 | zf-CCCH | 28.4 | 2.9e-09 | 323 | 343 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+ ++G+Ck+G++CkF H+ XP_013625214.1 323 CTFYIQNGFCKFGSTCKFDHP 343 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.3E-6 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 42 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 44 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-7 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.863 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-11 | 86 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-6 | 88 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.957 | 130 | 158 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 132 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-9 | 133 | 157 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 134 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 136 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-9 | 275 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 276 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0054 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.192 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 320 | 344 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 323 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-4 | 323 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MDMYGRTPPS QSAHGNADTG LEESMWRLGL GSETYPERPA APDCPYYMRT GVCGYGSRCR 60 YNHPPDRATV EATVRATGQY PERIGEPPCQ FYLKTGTCKY GASCKFNHPR NAGGSMSHVS 120 LNIYGYPVRE GGEKECSYYL KTGQCKFGIT CKFHHPQPAP AAATPPPPAS APQFYPSLQQ 180 QSLMPGAPSS SLRVARTLLP GSYMQGAYGP MLLSPGVLPM QGWSPYSAPV SPALSPGATS 240 LYGVPQLSST TPSLPGVYPS LPSPTHSFPE RPGELECQYY LKTGDCKFGT SCKFHHPRHR 300 VPPSANCNLS PIGLPLRPGV QGCTFYIQNG FCKFGSTCKF DHPTGYNASS SSLPDAPVST 360 LLGAPSSTGL LSGATRSTSN ISAGLIFSQS GGSIPFSDLQ LSSQTSLPLT GSRITRHGRE 420 IRRSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625214.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT030391 | 0.0 | BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625213.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_013625214.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0D3B759 | 0.0 | A0A0D3B759_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g039830.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |