PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625213.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 425aa    MW: 45485.4 Da    PI: 8.8492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.3e-124265427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C++++rtG C yG+rC+++H+p
  XP_013625213.1 42 PDCPYYMRTGVCGYGSRCRYNHPP 65
                    78********************97 PP
2zf-CCCH42.41.2e-1386110327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tGtCkyG++CkF+H++
  XP_013625213.1  86 EPPCQFYLKTGTCKYGASCKFNHPR 110
                     79*********************96 PP
3zf-CCCH35.71.5e-11133157327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tG+Ck+G +CkF+H++
  XP_013625213.1 133 EKECSYYLKTGQCKFGITCKFHHPQ 157
                     689********************97 PP
4zf-CCCH36.39.3e-12275298427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C+++++tG Ck+G +CkF+H++
  XP_013625213.1 275 LECQYYLKTGDCKFGTSCKFHHPR 298
                     58********************96 PP
5zf-CCCH28.42.9e-09323343626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C f+ ++G+Ck+G++CkF H+
  XP_013625213.1 323 CTFYIQNGFCKFGSTCKFDHP 343
                     ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-63865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9253866IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-94265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-64366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-54464IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-783110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86383111IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-1186110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-686111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-688110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957130158IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4132157IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9133157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4136156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967271299IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4271298IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9275298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6276300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5277299IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192317345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5320344IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6323343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4323342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDMYGRTPPS QSAHGNADTG LEESMWRLGL GSETYPERPA APDCPYYMRT GVCGYGSRCR  60
YNHPPDRATV EATVRATGQY PERIGEPPCQ FYLKTGTCKY GASCKFNHPR NAGGSMSHVS  120
LNIYGYPVRE GGEKECSYYL KTGQCKFGIT CKFHHPQPAP AAATPPPPAS APQFYPSLQQ  180
QSLMPGAPSS SLRVARTLLP GSYMQGAYGP MLLSPGVLPM QGWSPYSAPV SPALSPGATS  240
LYGVPQLSST TPSLPGVYPS LPSPTHSFPE RPGELECQYY LKTGDCKFGT SCKFHHPRHR  300
VPPSANCNLS PIGLPLRPGV QGCTFYIQNG FCKFGSTCKF DHPTGYNASS SSLPDAPVST  360
LLGAPSSTGL LSGATRSTSN ISAGLIFSQS GGSIPFSDLQ LSSQTSLPLT GSRITRHGRE  420
IRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625213.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
RefseqXP_013625214.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D3B7590.0A0A0D3B759_BRAOL; Uncharacterized protein
STRINGBo3g039830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein