PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 38393.3 Da PI: 7.236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 4.7e-08 | 183 | 229 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR+++ +++ L++++P + +k Ka +L + ++Y++sLq XP_013625069.1 183 HSLAERARREKLSKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 229 999**********************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.79E-7 | 176 | 233 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-16 | 176 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.462 | 178 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 180 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 183 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-10 | 184 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDYFSPHTYN SSLSFSLVLN PKGKDKSFKF LYLLYMDLSV LERVKWLQQQ QMVSPDFFEI 60 LGSDGREELK RVESYLGNNN DELQSFRHYE TIDGCISRTS SFQIEQVKNN EENRVIALQH 120 KRKTEGKTEK IENKKKKKIK TEDETESSMK GKSNMSNSET SSEIQKRDYI HVRARRGEAT 180 DRHSLAERAR REKLSKKMKC LQDIVPGCNK VTGKAGMLDE IINYVQSLQQ QVEFLSMKLS 240 VLNPELEYHI NELSTKQACF TDLPEAVSKQ LMMVDASSFP LQHQESLDYS VINSIQTTTL 300 GSKDQTSSGW EIHSQSLYNN LRTDSVSSFF SLE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 137 | KRKTEGKTEKIENKKKKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625069.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352723 | 0.0 | AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625069.1 | 0.0 | PREDICTED: transcription factor BEE 2 isoform X2 | ||||
Swissprot | Q93VJ4 | 1e-171 | BEE2_ARATH; Transcription factor BEE 2 | ||||
TrEMBL | A0A078IUH7 | 0.0 | A0A078IUH7_BRANA; BnaC03g76640D protein | ||||
TrEMBL | A0A0D3BK08 | 0.0 | A0A0D3BK08_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g154120.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36540.2 | 1e-149 | BR enhanced expression 2 |
Publications ? help Back to Top | |||
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