PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 29042.3 Da PI: 5.4523 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 134 | 183 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+++AeIrdp+ r +r++lg+f tae Aa+a+++a+ ++g XP_013625060.1 134 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAENAARAYDRAAIGFRG 183 8********.**********83....57*********************987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-21 | 134 | 192 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-12 | 134 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.986 | 134 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-36 | 134 | 197 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 135 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 135 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.45E-31 | 135 | 191 | No hit | No description |
PRINTS | PR00367 | 2.3E-11 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQYPYTRPGF IGASDTQTRT WYQYQEPLSP EQELSVIVSA LQHVISGESD TTPYQVFSSD 60 STVIMPRSDS NTCQVCRIDG CLGCDYFFAP NQRIEKRQHV VVEEDGVTST SGGRDRSAMA 120 EGGKIRKRRN KKNGYRGVRQ RPWGKFAAEI RDPKRATRVW LGTFETAENA ARAYDRAAIG 180 FRGPRAKLNF PFMDYTSSPV AADTSASVSA SASVSAVDSG EAEQWRGGGE CDMDEYLKMM 240 MMMDFGNGDS SDSGNTIADM FQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-24 | 135 | 192 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625060.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 3e-96 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0D3BLE7 | 0.0 | A0A0D3BLE7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g168910.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-82 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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