PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625013.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 354aa    MW: 38655.5 Da    PI: 8.3094
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.3e-30110168159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+W+KYGqK ++g++++rsYY+Ct++gC vkk+versa++ k ++itY g+H+h+
  XP_013625013.1 110 LDDGYSWKKYGQKLIRGNPNARSYYKCTFSGCDVKKHVERSADNAKSLVITYYGNHEHD 168
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-3097170IPR003657WRKY domain
SuperFamilySSF1182902.22E-25104170IPR003657WRKY domain
PROSITE profilePS5081130.549105170IPR003657WRKY domain
SMARTSM007744.4E-33110169IPR003657WRKY domain
PfamPF031062.7E-23111167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEMTSYSASQ LIFTIAPPSP VAIIGPPEVV ESSGGDHATM MISNNGLPHQ RIDVDQAPED  60
HNIVDVLNVE PSSPERRGNE VSLSNMIMAS RTGRYDERVV IQMKSEENNL DDGYSWKKYG  120
QKLIRGNPNA RSYYKCTFSG CDVKKHVERS ADNAKSLVIT YYGNHEHDAP VKRRKCYSLK  180
KRSGSSMFQD ASNRTPRLGR PPFSSSAFQV FPPSLEPHLD MTQINMKGLS KLPSLPANQM  240
TGPRRKPAAP TFSQMIHDGV GKSSSGPSSS EAVPDSQTSQ RVSWSSSPPA PHMPAPPSPP  300
AAAPQPVPAG AVHPDLCVPP SAPYARYKVE DLLAQPGREG LDFLDPDRPP GPYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24101170877Probable WRKY transcription factor 4
2lex_A3e-24101170877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931430.0KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625013.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A078J9P01e-147A0A078J9P0_BRANA; BnaCnng39880D protein
TrEMBLA0A0D3BNA41e-147A0A0D3BNA4_BRAOL; Uncharacterized protein
STRINGBo3g185390.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1951837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.13e-38WRKY DNA-binding protein 10