PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013624999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 28090.6 Da PI: 9.1997 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.6e-29 | 102 | 160 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W+KYGqK ++g++++rsYY+Ct+ gC+vkk+ver a++ k ++itY g+H+h XP_013624999.1 102 LDDGYSWKKYGQKLIRGNPNARSYYKCTFVGCNVKKHVERRADNVKSLVITYYGNHEHA 160 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.6E-29 | 91 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-25 | 96 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.493 | 97 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-32 | 102 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-22 | 103 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MFSNSSSQIV PPSSVTIIGP PEMVENYGGD HATMMISNNG LPHQRMDADQ APEDPNIGYV 60 LNVEPSSPKR REDDVSNMIG AIRTGRYNEG VKIQMESEEN NLDDGYSWKK YGQKLIRGNP 120 NARSYYKCTF VGCNVKKHVE RRADNVKSLV ITYYGNHEHA APVHRRKCYL LKKRPGSSMS 180 QDASNKTPRL GRPPSSSSAF QVFSPSFEPH LDMTQINMTG LSKLPSLPAN QNDEPKIDRA 240 YPMVHRYTWG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-23 | 93 | 163 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-23 | 93 | 163 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013624999.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM593143 | 0.0 | KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624999.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 | ||||
TrEMBL | A0A0D3BN19 | 0.0 | A0A0D3BN19_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g184540.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10299 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55600.1 | 1e-38 | WRKY DNA-binding protein 10 |