PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624968.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 357aa    MW: 38885.7 Da    PI: 4.613
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.26e-27196252258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDg++WrKYGqK+v+g+ +prs YrCt++gC+vkk ve+s ++ k+v+ tY g H+h
  XP_013624968.1 196 DDGFRWRKYGQKVVTGNANPRSDYRCTYTGCEVKKLVEKSVDNVKLVVATYDGIHEH 252
                     8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-26181254IPR003657WRKY domain
PROSITE profilePS5081126.486190255IPR003657WRKY domain
SuperFamilySSF1182902.62E-22192255IPR003657WRKY domain
SMARTSM007741.2E-28195254IPR003657WRKY domain
PfamPF031064.4E-20196252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAAKLGFDIP PLELGRIIPP CPLPNDAPPE TVESSGDVHA MMIISNNNLP HQPIDVHLPP  60
QGGSDDIPTE NSVYITSHES NADPIDAPLV RSFDSEVVAR AAPKTLSTAL VVVEADVMNP  120
ISLESGSKDN DKEREYNQEE DKVEDHNVVV EPPTRKRKSQ VNTEENMVSN IIGVTRPKNK  180
TQSVIIQVES VEDYPDDGFR WRKYGQKVVT GNANPRSDYR CTYTGCEVKK LVEKSVDNVK  240
LVVATYDGIH EHVPPPECIS KSSTKNQSGS SMSQDPSMQT LGLGMLPSCV STSQLLPSPL  300
APQMDMMQNY MDGVSKLPSL PANRNHGVMN RNDEPKIDLV IPDGAEGIQG DKGATIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19184256375WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158TRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624968.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A0D3BMK90.0A0A0D3BMK9_BRAOL; Uncharacterized protein
STRINGBo3g180960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.13e-61WRKY DNA-binding protein 10