PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624963.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 339aa    MW: 39204.2 Da    PI: 8.317
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.9e-114795155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  kl+g
  XP_013624963.1 47 TKYKGVVQQQ-NGHWGAQIYAE-----HRRIWLGTFKSAAEAAAAYDSASIKLRG 95
                    69****9888.8*********5.....5************************998 PP
2B391.94.8e-29170261183
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f k+ltpsdv+k++rlv+pkk+a +h         +g+   +++++++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF+
  XP_013624963.1 170 FHKELTPSDVGKLNRLVIPKKYAVKHlpfisddqeEGEAVDDVEVVFYDSTMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVIVFY 261
                     89*****************************98887777799*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.49E-1347107No hitNo description
PfamPF008472.8E-64795IPR001471AP2/ERF domain
PROSITE profilePS5103217.66248105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1748105IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1448107IPR016177DNA-binding domain
SMARTSM003806.8E-1948111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-31164262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-27168263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-24169261No hitNo description
SMARTSM010191.1E-19170275IPR003340B3 DNA binding domain
PfamPF023627.8E-26170262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421170273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVILHEISNE AKTTTETSGS INSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW  60
GAQIYAEHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY  120
TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG  180
KLNRLVIPKK YAVKHLPFIS DDQEEGEAVD DVEVVFYDST MRQWKFRYCY WRSSQSFVFT  240
RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH  300
NKSEGEMKTE NFFNSKLEDE ETKQEENKGG FMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2616926013100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624963.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-179RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078IPB00.0A0A078IPB0_BRANA; BnaC03g77730D protein
TrEMBLA0A0D3BMK10.0A0A0D3BMK1_BRAOL; Uncharacterized protein
STRINGBo3g179890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-160RAV family protein