PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624814.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 234aa    MW: 26729.9 Da    PI: 5.3718
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624814.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37e-2071131257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+lF + + +ps++++++L+++l    ++ e+++ +WFqNrRa+ k+
  XP_013624814.1  71 RQRWTPTPLQLQILERLFDQdTGTPSKQKIKDLTEELsqhgQIAEQNICNWFQNRRARSKR 131
                     89*****************99**************************************97 PP

2Wus_type_Homeobox91.57.7e-3070133265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+l+++ + tP+k++i+++t+eL+++G+i ++N+ +WFQNr+aR+++kq
     XP_013624814.1  70 ARQRWTPTPLQLQILERLFDQDTGTPSKQKIKDLTEELSQHGQIAEQNICNWFQNRRARSKRKQ 133
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1566134IPR009057Homeodomain-like
PROSITE profilePS5007114.65767132IPR001356Homeobox domain
SuperFamilySSF466891.03E-1669134IPR009057Homeodomain-like
SMARTSM003896.9E-1469136IPR001356Homeobox domain
PfamPF000461.2E-1771131IPR001356Homeobox domain
CDDcd000861.10E-1171133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MELDNQQQPN PMKVMTDEQL ETLRKQIAIY ATICERLVEM HKTLTSQQDL AAGRMVSLYA  60
DPSIGHKMTA RQRWTPTPLQ LQILERLFDQ DTGTPSKQKI KDLTEELSQH GQIAEQNICN  120
WFQNRRARSK RKQHCGVGSS NNKNGEGEVE TETETMNEKR KRPESLFVVL PDGNNNNVIG  180
TTTTTSPTPE DLCFQSPKMS LDLHLLGVQS NPRDEHLVES YNLYDHVEDY DMSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624814.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895410.0AC189541.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004A18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624814.11e-177PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817881e-113WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A0D3BK551e-155A0A0D3BK55_BRAOL; Uncharacterized protein
STRINGBo3g155580.11e-156(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-107WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]