PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624793.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 292aa    MW: 33276.7 Da    PI: 8.8912
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.9e-0755117144
                      TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT........TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg........kgRtlkqcksrw 44 
                      r +WT+ Ed  l+ a     ++            Wk+Ia++ g        ++R + +cksrw
   XP_013624793.1  55 RRKWTPTEDRVLISAWLNTSKDplvgnekkaiaFWKRIAAYYGaspkldglQKREPTHCKSRW 117
                      679****************999*****************************99********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.17850121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.9E-655118IPR009057Homeodomain-like
PfamPF143038.2E-8162262IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSYSQSSSL MDLLTNQQPN TQPSLDQSAS NVTVFGPWSE DAEFEAHTVE DRKERRKWTP  60
TEDRVLISAW LNTSKDPLVG NEKKAIAFWK RIAAYYGASP KLDGLQKREP THCKSRWGKI  120
NEAVCKFIGC YDTATKQKSS GQNEDDVMKM AHEIYFNDYK VKFMLEHAWL ELRHDQKWCG  180
ASTTKDKVSS KRRKLDEQSA QSSTSVPGED DQRPIGVKAA KAKEKKSVSK STTLEEEGKE  240
IQSMWEIRKK DFALKDALNK QKLLCSLIAK AEPLTELEIA FKNKLIKDML TS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624793.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624793.10.0PREDICTED: glutathione S-transferase T3-like
TrEMBLA0A0D3A5810.0A0A0D3A581_BRAOL; Uncharacterized protein
STRINGBo1g028470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2225