PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013624761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 203aa MW: 22770.9 Da PI: 8.3964 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 60.7 | 6.9e-19 | 1 | 110 | 1 | 92 |
GAGA_bind 1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75 m++ g+++ r k+ y++ ++++l +++++ms++aerda+++ern al++kk+a+a+rd+a+ qrdkal+er++a++ XP_013624761.1 1 MESGGQYDngRCKPdYFKgtppsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAALKERNEALAAKKEALAARDEALEQRDKALSERDNAIM 93 88889988899999999999999999998887754446666..99************************************************** PP GAGA_bind 76 erdnkllalllvensla 92 er+ +l al + e++ XP_013624761.1 94 ERETALNALHYPEKNNL 110 ********998877654 PP | |||||||
2 | GAGA_bind | 54.5 | 5.1e-17 | 129 | 200 | 149 | 222 |
GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222 ++++ +++ ++++ ++k+ +k +e+ ++ ++++ ++ +++++ +++ln v++De+t+PvP+C+CtG+ rqC XP_013624761.1 129 NPSHISTKPTKRKIETKQGNKLGEDLNRLAASPG--KKCRKDWDVNEVGLNLVAFDETTMPVPMCTCTGTARQC 200 3333333333333344455666777777777777..57************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 4.1E-35 | 1 | 202 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.7E-25 | 18 | 200 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MESGGQYDNG RCKPDYFKGT PPSVWNMMPQ HQIKEQHNAL VMNKKIMSIL AERDAALKER 60 NEALAAKKEA LAARDEALEQ RDKALSERDN AIMERETALN ALHYPEKNNL NYILSCAKRG 120 ETERSHLPNP SHISTKPTKR KIETKQGNKL GEDLNRLAAS PGKKCRKDWD VNEVGLNLVA 180 FDETTMPVPM CTCTGTARQC CCG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013624761.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624761.1 | 1e-152 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Swissprot | F4JUI3 | 1e-100 | BPC5_ARATH; Protein BASIC PENTACYSTEINE5 | ||||
TrEMBL | A0A0D3BJA9 | 1e-150 | A0A0D3BJA9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g149650.1 | 1e-151 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4090 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38910.2 | 8e-84 | basic pentacysteine 5 |