PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013624402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24934.5 Da PI: 8.2235 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 86 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAe+r p+ + +r +lg+f taeeAa a+++a+ k++g XP_013624402.1 86 LYRGVRQRQ-WGKWVAEVRLPK----HrTRLWLGTFKTAEEAALAYDQAAHKIRG 135 59****999.**********83....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.04E-31 | 85 | 144 | No hit | No description |
SMART | SM00380 | 1.6E-34 | 86 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 86 | 144 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.484 | 86 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 86 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 87 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-13 | 87 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MTILNMNGCA EEFMKAVEPF MKVTEPVPLT PDNQTGPIGL NSLTDTQILE IQRELHLRQQ 60 NQARRRGCGA KPTPMKKTNV TRPVKLYRGV RQRQWGKWVA EVRLPKHRTR LWLGTFKTAE 120 EAALAYDQAA HKIRGDNTRL NFPDIDGMSQ LYWLEPWGPI VMLPGWDPNL AFGDGSGTSE 180 VPILDFDDFF ADLPTGFDAP QATSESGRPK FVAEGSRIIN GV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 85 | 143 | 4 | 63 | ATERF1 |
3gcc_A | 2e-18 | 85 | 143 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013624402.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013395 | 6e-59 | AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23. | |||
GenBank | AY560858 | 6e-59 | AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds. | |||
GenBank | BT025723 | 6e-59 | BT025723.1 Arabidopsis thaliana At5g65130 mRNA, complete cds. | |||
GenBank | CP002688 | 6e-59 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ447109 | 6e-59 | DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds. | |||
GenBank | DQ653392 | 6e-59 | DQ653392.1 Arabidopsis thaliana clone 0000013473_0000009703 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624402.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor ERF057-like | ||||
Swissprot | Q9FJQ2 | 4e-68 | ERF57_ARATH; Ethylene-responsive transcription factor ERF057 | ||||
TrEMBL | A0A0D3BEV7 | 1e-115 | A0A0D3BEV7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g100470.1 | 1e-116 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13499 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65130.1 | 1e-60 | ERF family protein |
Publications ? help Back to Top | |||
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