PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013624214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 454aa MW: 52074.7 Da PI: 6.333 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 146 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + ng r++lg+f taeeAa a+++a+ +++g XP_013624214.1 146 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFHTAEEAAMAYDKAAVRIRG 196 8********.**********44465..**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-28 | 145 | 205 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 146 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 146 | 206 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-35 | 146 | 211 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-11 | 146 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.60E-28 | 146 | 206 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 147 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MIRVSTHIEN PDFTRNVKPS MKRGGTKAHQ HILFNPTIAF GNIVQEPDRE ILKNVWENFI 60 RKPETDTRSV HVQEVSTTWE ALPTLDDISK ESKGSLPTID MSMEAKEWAE ILDSIASFPS 120 ETNHEPLTNP TGSRSLSSPV SCKTRKYRGV RRRPWGKFAA EIRDSTRNGV RVWLGTFHTA 180 EEAAMAYDKA AVRIRGVQRA HTNFQIETVI KAMGMECSRS YYPINRSSTS QPLSNYHETG 240 GKETIRSYND RVVDGMVDNS CAFSYCSTQE CLDICGMVGD EETCTGSRKR QRRDEDCIML 300 QLQEVETDDK KMASRGEEKC DVFGLFEFEE FGSTDMEEEL RDMKAHKAYI SQVDFVANAQ 360 QGIPQLCPCG SIMKRTVDEV DTYDYLPGKR FFICKDFKND GLHFRQPWVM AVEEEVERLK 420 QRVHDHDKLL RECEALKSQV RRLGERVADL ERLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-23 | 143 | 206 | 2 | 64 | ATERF1 |
3gcc_A | 2e-23 | 143 | 206 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013624214.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624214.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF091-like | ||||
Swissprot | O49515 | 1e-129 | ERF91_ARATH; Ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A0D3A438 | 0.0 | A0A0D3A438_BRAOL; Adenylosuccinate lyase | ||||
STRING | Bo1g019590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 1e-121 | ERF family protein |