PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624214.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 454aa    MW: 52074.7 Da    PI: 6.333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18146196255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  XP_013624214.1 146 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFHTAEEAAMAYDKAAVRIRG 196
                     8********.**********44465..**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-28145205IPR001471AP2/ERF domain
PROSITE profilePS5103222.576146205IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-20146206IPR016177DNA-binding domain
SMARTSM003804.5E-35146211IPR001471AP2/ERF domain
PfamPF008471.9E-11146196IPR001471AP2/ERF domain
CDDcd000182.60E-28146206No hitNo description
PRINTSPR003672.5E-10147158IPR001471AP2/ERF domain
PRINTSPR003672.5E-10170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MIRVSTHIEN PDFTRNVKPS MKRGGTKAHQ HILFNPTIAF GNIVQEPDRE ILKNVWENFI  60
RKPETDTRSV HVQEVSTTWE ALPTLDDISK ESKGSLPTID MSMEAKEWAE ILDSIASFPS  120
ETNHEPLTNP TGSRSLSSPV SCKTRKYRGV RRRPWGKFAA EIRDSTRNGV RVWLGTFHTA  180
EEAAMAYDKA AVRIRGVQRA HTNFQIETVI KAMGMECSRS YYPINRSSTS QPLSNYHETG  240
GKETIRSYND RVVDGMVDNS CAFSYCSTQE CLDICGMVGD EETCTGSRKR QRRDEDCIML  300
QLQEVETDDK KMASRGEEKC DVFGLFEFEE FGSTDMEEEL RDMKAHKAYI SQVDFVANAQ  360
QGIPQLCPCG SIMKRTVDEV DTYDYLPGKR FFICKDFKND GLHFRQPWVM AVEEEVERLK  420
QRVHDHDKLL RECEALKSQV RRLGERVADL ERLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23143206264ATERF1
3gcc_A2e-23143206264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624214.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
SwissprotO495151e-129ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A0D3A4380.0A0A0D3A438_BRAOL; Adenylosuccinate lyase
STRINGBo1g019590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-121ERF family protein