PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624170.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 346aa    MW: 39569.2 Da    PI: 9.6619
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-1323951293
                    HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                     s+ + +p  f ++h +g ++e   ++l++  s  +Wevk+  ++++    lt GW++F+  +  k+gD+v+F++dg+  f  +
  XP_013624170.1 23 HSH-INIPVAFYSKHiKGTTNE--VVKLRSdASDLTWEVKM--DGRR----LTHGWEKFATGHAFKVGDIVIFRHDGDLLF--H 95
                    444.89*********7666444..6888776899*******..9998....***********************8875333..4 PP
2B364.51.6e-20134226397
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + +++++lk++ l lp +f +++g +++es +++l +e+g+ W++ ++y k+sg++++++GW +F++an+ +++D+++Fkl++ +++++v++++
  XP_013624170.1 134 VARVTESNLKKDALFLPQHFSRSNGFVNRES-EIILLNEDGELWTLLMKYYKTSGHVYIRRGWISFCQANRKRANDVLTFKLVQ-TGRKPVLQLR 226
                     56689999****************9998776.**************************************************98.7777888876 PP
3B335.71.5e-11246333190
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f++ +++ ++lks+ l+lp  f+ ++g+k+ +  +++l d+ g + +  l+ + k gr+ + k   +F++ang+k+g+++ ++l++++e+
  XP_013624170.1 246 FVTLTLKQYHLKSCKLSLPVAFVMANGIKNVR--KIILVDRYGVRRTTSLKPDDKYGRMRMDKECIKFCEANGVKVGESFRLELIKEKEE 333
                     67778899******************999666..8********999999988999999*************************9987433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-196104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-1811109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.99711102IPR003340B3 DNA binding domain
CDDcd100178.64E-151299No hitNo description
SMARTSM010191.4E-1814102IPR003340B3 DNA binding domain
PfamPF023622.0E-82591IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-20126228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-22127229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.057132228IPR003340B3 DNA binding domain
CDDcd100179.83E-20132226No hitNo description
SMARTSM010191.5E-25132229IPR003340B3 DNA binding domain
PfamPF023623.2E-19134226IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-13240344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-13243338IPR015300DNA-binding pseudobarrel domain
CDDcd100177.09E-11245333No hitNo description
PfamPF023624.3E-10246336IPR003340B3 DNA binding domain
SMARTSM010199.4E-15246346IPR003340B3 DNA binding domain
PROSITE profilePS508637.57246345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MANGSASSAI NPHFFQPLLP GFHSHINIPV AFYSKHIKGT TNEVVKLRSD ASDLTWEVKM  60
DGRRLTHGWE KFATGHAFKV GDIVIFRHDG DLLFHVTPFG PSCCEIQYND DDDEKYHQQH  120
TREAGSSSDN SCFVARVTES NLKKDALFLP QHFSRSNGFV NRESEIILLN EDGELWTLLM  180
KYYKTSGHVY IRRGWISFCQ ANRKRANDVL TFKLVQTGRK PVLQLRASVY NNRASTSFSS  240
TSQDRFVTLT LKQYHLKSCK LSLPVAFVMA NGIKNVRKII LVDRYGVRRT TSLKPDDKYG  300
RMRMDKECIK FCEANGVKVG ESFRLELIKE KEEDTATHLL KFCSKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894311e-131AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624170.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A0D3BAN30.0A0A0D3BAN3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AKW60.0A0A3P6AKW6_BRAOL; Uncharacterized protein
STRINGBo3g063950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-90B3 family protein