PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623972.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 265aa    MW: 30052.2 Da    PI: 8.221
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.11e-20147240498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++++lk++ l+lp   +++  ++k++ ++++l +++g+sW+v l+++  +g+y++++ W++F+ +n+ + gD +vF l+g+ ++++++ v+ 
  XP_013623972.1 147 AEVTASNLKEDKLYLPVGATSSTALNKQC-QEMILVNKKGKSWTVSLRFSELGGMYYIRRSWRKFCLDNRCDIGDLFVFNLVGDGKTTPLMCVCP 240
                     678999**************999999877.5*****************************************************99999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-17143233IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-17144233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816144242IPR003340B3 DNA binding domain
CDDcd100176.59E-16144230No hitNo description
SMARTSM010192.4E-18145242IPR003340B3 DNA binding domain
PfamPF023621.5E-19147240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNKPHPRKGK NNRGLGRRVN RAEEQREPQI ELTGKIPVKN RRQHQERCDR ETVANRPSPK  60
GKMANPHEPH FLKPLLPPEG DMVFHVTPFG PSCCEIQYTH PHIIKEEAEA DDAADDAAGD  120
ADDNEHHHKI RGTWAMSSFS FDYCFLAEVT ASNLKEDKLY LPVGATSSTA LNKQCQEMIL  180
VNKKGKSWTV SLRFSELGGM YYIRRSWRKF CLDNRCDIGD LFVFNLVGDG KTTPLMCVCP  240
ERKECSELLS KHLSRKSGES SPLTC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.11671e-102leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623972.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-130AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623972.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A0D3B6071e-151A0A0D3B607_BRAOL; Uncharacterized protein
STRINGBo3g034820.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-26B3 family protein